Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems.
Identifieur interne : 002060 ( Main/Exploration ); précédent : 002059; suivant : 002061Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems.
Auteurs : Yongfang Wan [Royaume-Uni] ; Cristina Gritsch ; Theodora Tryfona ; Mike J. Ray ; Ambrose Andongabo ; Keywan Hassani-Pak ; Huw D. Jones ; Paul Dupree ; Angela Karp ; Peter R. Shewry ; Rowan A C. MitchellSource :
- Planta [ 1432-2048 ] ; 2014.
Descripteurs français
- KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Cellulose (métabolisme), Hybridation in situ (MeSH), Lignine (métabolisme), Paroi cellulaire (génétique), Régulation de l'expression des gènes végétaux (MeSH), Salix (croissance et développement), Salix (cytologie), Salix (génétique), Tiges de plante (croissance et développement), Tiges de plante (génétique), Xylanes (métabolisme), Études d'associations génétiques (MeSH).
- MESH :
- croissance et développement : Salix, Tiges de plante.
- cytologie : Salix.
- génétique : ARN messager, Paroi cellulaire, Salix, Tiges de plante.
- métabolisme : ARN messager, Cellulose, Lignine, Xylanes.
- Hybridation in situ, Régulation de l'expression des gènes végétaux, Études d'associations génétiques.
English descriptors
- KwdEn :
- Cell Wall (genetics), Cellulose (metabolism), Gene Expression Regulation, Plant (MeSH), Genetic Association Studies (MeSH), In Situ Hybridization (MeSH), Lignin (metabolism), Plant Stems (genetics), Plant Stems (growth & development), RNA, Messenger (genetics), RNA, Messenger (metabolism), Salix (cytology), Salix (genetics), Salix (growth & development), Xylans (metabolism).
- MESH :
- chemical , genetics : RNA, Messenger.
- chemical , metabolism : Cellulose, Lignin, RNA, Messenger, Xylans.
- cytology : Salix.
- genetics : Cell Wall, Plant Stems, Salix.
- growth & development : Plant Stems, Salix.
- Gene Expression Regulation, Plant, Genetic Association Studies, In Situ Hybridization.
Abstract
The properties of the secondary cell wall (SCW) in willow largely determine the suitability of willow biomass feedstock for potential bioenergy and biofuel applications. SCW development has been little studied in willow and it is not known how willow compares with model species, particularly the closely related genus Populus. To address this and relate SCW synthesis to candidate genes in willow, a tractable bud culture-derived system was developed in Salix purpurea, and cell wall composition and RNA-Seq transcriptome were followed in stems during early development. A large increase in SCW deposition in the period 0-2 weeks after transfer to soil was characterised by a big increase in xylan content, but no change in the frequency of substitution of xylan with glucuronic acid, and increased abundance of putative transcripts for synthesis of SCW cellulose, xylan and lignin. Histochemical staining and immunolabeling revealed that increased deposition of lignin and xylan was associated with xylem, xylem fibre cells and phloem fibre cells. Transcripts orthologous to those encoding xylan synthase components IRX9 and IRX10 and xylan glucuronyl transferase GUX1 in Arabidopsis were co-expressed, and showed the same spatial pattern of expression revealed by in situ hybridisation at four developmental stages, with abundant expression in proto-xylem, xylem fibre and ray parenchyma cells and some expression in phloem fibre cells. The results show a close similarity with SCW development in Populus species, but also give novel information on the relationship between spatial and temporal variation in xylan-related transcripts and xylan composition.
DOI: 10.1007/s00425-014-2034-1
PubMed: 24504696
PubMed Central: PMC3997797
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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SCW development has been little studied in willow and it is not known how willow compares with model species, particularly the closely related genus Populus. To address this and relate SCW synthesis to candidate genes in willow, a tractable bud culture-derived system was developed in Salix purpurea, and cell wall composition and RNA-Seq transcriptome were followed in stems during early development. A large increase in SCW deposition in the period 0-2 weeks after transfer to soil was characterised by a big increase in xylan content, but no change in the frequency of substitution of xylan with glucuronic acid, and increased abundance of putative transcripts for synthesis of SCW cellulose, xylan and lignin. Histochemical staining and immunolabeling revealed that increased deposition of lignin and xylan was associated with xylem, xylem fibre cells and phloem fibre cells. Transcripts orthologous to those encoding xylan synthase components IRX9 and IRX10 and xylan glucuronyl transferase GUX1 in Arabidopsis were co-expressed, and showed the same spatial pattern of expression revealed by in situ hybridisation at four developmental stages, with abundant expression in proto-xylem, xylem fibre and ray parenchyma cells and some expression in phloem fibre cells. The results show a close similarity with SCW development in Populus species, but also give novel information on the relationship between spatial and temporal variation in xylan-related transcripts and xylan composition.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24504696</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>09</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2048</ISSN><JournalIssue CitedMedium="Internet"><Volume>239</Volume><Issue>5</Issue><PubDate><Year>2014</Year><Month>May</Month></PubDate></JournalIssue><Title>Planta</Title><ISOAbbreviation>Planta</ISOAbbreviation></Journal><ArticleTitle>Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems.</ArticleTitle><Pagination><MedlinePgn>1041-53</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00425-014-2034-1</ELocationID><Abstract><AbstractText>The properties of the secondary cell wall (SCW) in willow largely determine the suitability of willow biomass feedstock for potential bioenergy and biofuel applications. SCW development has been little studied in willow and it is not known how willow compares with model species, particularly the closely related genus Populus. To address this and relate SCW synthesis to candidate genes in willow, a tractable bud culture-derived system was developed in Salix purpurea, and cell wall composition and RNA-Seq transcriptome were followed in stems during early development. A large increase in SCW deposition in the period 0-2 weeks after transfer to soil was characterised by a big increase in xylan content, but no change in the frequency of substitution of xylan with glucuronic acid, and increased abundance of putative transcripts for synthesis of SCW cellulose, xylan and lignin. Histochemical staining and immunolabeling revealed that increased deposition of lignin and xylan was associated with xylem, xylem fibre cells and phloem fibre cells. Transcripts orthologous to those encoding xylan synthase components IRX9 and IRX10 and xylan glucuronyl transferase GUX1 in Arabidopsis were co-expressed, and showed the same spatial pattern of expression revealed by in situ hybridisation at four developmental stages, with abundant expression in proto-xylem, xylem fibre and ray parenchyma cells and some expression in phloem fibre cells. The results show a close similarity with SCW development in Populus species, but also give novel information on the relationship between spatial and temporal variation in xylan-related transcripts and xylan composition.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wan</LastName><ForeName>Yongfang</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gritsch</LastName><ForeName>Cristina</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Tryfona</LastName><ForeName>Theodora</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Ray</LastName><ForeName>Mike J</ForeName><Initials>MJ</Initials></Author><Author ValidYN="Y"><LastName>Andongabo</LastName><ForeName>Ambrose</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Hassani-Pak</LastName><ForeName>Keywan</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Huw D</ForeName><Initials>HD</Initials></Author><Author ValidYN="Y"><LastName>Dupree</LastName><ForeName>Paul</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Karp</LastName><ForeName>Angela</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Shewry</LastName><ForeName>Peter R</ForeName><Initials>PR</Initials></Author><Author ValidYN="Y"><LastName>Mitchell</LastName><ForeName>Rowan A C</ForeName><Initials>RA</Initials></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>BB/G016240/1</GrantID><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>BBS/E/C/00004158</GrantID><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>BBS/E/C/00004975</GrantID><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant><Grant><GrantID>BB/G016216/1</GrantID><Agency>Biotechnology and Biological Sciences Research Council</Agency><Country>United Kingdom</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>02</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Planta</MedlineTA><NlmUniqueID>1250576</NlmUniqueID><ISSNLinking>0032-0935</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014990">Xylans</NameOfSubstance></Chemical><Chemical><RegistryNumber>9004-34-6</RegistryNumber><NameOfSubstance UI="D002482">Cellulose</NameOfSubstance></Chemical><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance UI="D008031">Lignin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002482" MajorTopicYN="N">Cellulose</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D056726" MajorTopicYN="Y">Genetic Association Studies</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017403" MajorTopicYN="N">In Situ Hybridization</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014990" MajorTopicYN="N">Xylans</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>09</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>01</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>2</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>2</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>12</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24504696</ArticleId><ArticleId 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Jones</name><name sortKey="Karp, Angela" sort="Karp, Angela" uniqKey="Karp A" first="Angela" last="Karp">Angela Karp</name><name sortKey="Mitchell, Rowan A C" sort="Mitchell, Rowan A C" uniqKey="Mitchell R" first="Rowan A C" last="Mitchell">Rowan A C. Mitchell</name><name sortKey="Ray, Mike J" sort="Ray, Mike J" uniqKey="Ray M" first="Mike J" last="Ray">Mike J. Ray</name><name sortKey="Shewry, Peter R" sort="Shewry, Peter R" uniqKey="Shewry P" first="Peter R" last="Shewry">Peter R. Shewry</name><name sortKey="Tryfona, Theodora" sort="Tryfona, Theodora" uniqKey="Tryfona T" first="Theodora" last="Tryfona">Theodora Tryfona</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Wan, Yongfang" sort="Wan, Yongfang" uniqKey="Wan Y" first="Yongfang" last="Wan">Yongfang Wan</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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